4M5R

High-resolution influenza 2009 H1N1 endonuclease bound to 4-(1H-IMIDAZOL-1-YL)PHENOL

Structural Biology Knowledgebase: 4M5R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M5R

Classification: RNA BINDING PROTEIN / INHIBITOR

Total Structure Weight: 29203.73

Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase PA A 241 Influenza a virus Fragment: unp residues 1-204
Mutation: I201V

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MSR
Query on MSR

A 4-(1H-IMIDAZOL-1-YL)PHENOL
C9 H8 N2 O
CYKCUAPYWQDIKR-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MSR N/A in BindingDB
IC50: 1000000 nM  BindingMOAD
IC50: 1000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.161
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 87.25 α = 90.00
b = 102.98 β = 90.00
c = 66.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-08
  • Released Date: 2013-09-18
  • Deposition author(s): Bauman, J.D., Patel, D., Das, K., Arnold, E.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update
  • 2013-12-04
    Type: Other | Details: RELATED ENTRY