4M5D

Crystal structure of the Utp22 and Rrp7 complex from Saccharomyces cerevisiae

Structural Biology Knowledgebase: 4M5D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M5D

Classification: RNA BINDING PROTEIN

Total Structure Weight: 176695.09

Macromolecule Entities
Molecule Chains Length Organism Details
U3 small nucleolar RNA-associated protein 22 A 1237 Saccharomyces cerevisiae Gene Name(s): UTP22 YGR090W
Ribosomal RNA-processing protein 7 B 297 Saccharomyces cerevisiae Gene Name(s): RRP7 YCL031C YCL184 YCL31C

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

A, B TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.208
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 126.26 α = 90.00
b = 129.56 β = 90.00
c = 214.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-08
  • Released Date: 2013-11-06
  • Deposition author(s): Lin, J., Ye, K.

Revision History

No revisions since initial release