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RB69 DNA polymerase ternary complex with dG/dT at position n-1 of primer/template duplex
DOI:10.2210/pdb4m3y/pdb   NDB ID: NA2673
4M3Y
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 114063.45
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 903
    Chains: A
    EC#: 2.7.7.7   
    Mutation: D222A,D327A,L415A,L561A,S565G,Y567A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
    Molecule: DNA template
    Polymer: 2 Type: dna Length: 16
    Chains: T
    Molecule: DNA primer
    Polymer: 3 Type: dna Length: 13
    Chains: P
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4M3R   
    4M3T   
    4M3U   
    4M3W   
    4M3X   
    4M3Z   
    4M41   
    4M42   
    4M45   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ATP
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    ATP C10 H16 N5 O13 P3
    ADENOSINE-5'-TRIPHOSPHATE
    ATP:4M3Y
    CA
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    CA Ca
    CALCIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2673
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Xia, S.,  Konigsberg, W.H.

    Deposition:   2013-08-06
    Release:   2014-02-12
    Last Modified (REVDAT):   2014-04-09
     
  •   Revision History    Hide
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    2014-04-09
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.86
    R-Value: 0.187 (obs.)
    R-Free: 0.221
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 75.00 α = 90.00 
    b = 120.18 β = 90.00 
    c = 130.62 γ = 90.00