4LZG

Binary complex of human DNA Polymerase Mu with DNA

Structural Biology Knowledgebase: 4LZG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LZG

Classification: TRANSFERASE / DNA

Total Structure Weight: 45387.29


Macromolecule Entities
Molecule Chains Length Organism Details
DNA-directed DNA/RNA polymerase mu A 356 Homo sapiens EC#: 2.7.7.7 IUBMB
Fragment: Polymerase Mu Loop2 deletion variant, UNP residues 132-494
Mutation: ΔP398, ΔG399, ΔA400, ΔA401, ΔV402, ΔG403, ΔG404, ΔS405, ΔT406, ΔR407, ΔP408, ΔC409, ΔP410
Gene Name(s): POLM Gene View polmu
Macromolecule Entities
Molecule Chains Length Organism Details
template strand T 9 synthetic
upstream primer strand P 4 synthetic
downstream primer strand D 4 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.174
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.00 α = 90.00
b = 68.51 β = 90.00
c = 110.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-31
  • Released Date: 2014-02-05
  • Deposition author(s): Moon, A.F., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Bebenek, K., Pedersen, L.C.

Revision History

  • 2014-03-19
    Type: Citation | Details: Citation update
  • 2014-03-05
    Type: Citation | Details: Citation update