4LXH

Crystal Structure of the S105A mutant of a carbon-carbon bond hydrolase, DxnB2 from Sphingomonas wittichii RW1, in complex with 3-Cl HOPDA

Structural Biology Knowledgebase: 4LXH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LXH

Classification: HYDROLASE

Total Structure Weight: 30484.36

Macromolecule Entities
Molecule Chains Length Organism Details
MCP Hydrolase A 277 Sphingomonas wittichii EC#: 3.7.1.8 IUBMB
Mutation: S105A
Gene Name(s): Swit_3055
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C1E
Query on C1E

A (2Z,4E)-3-chloro-2-hydroxy-6-oxo-6-phenylhexa- 2,4-dienoic acid
C12 H9 Cl O4
IBJDCVXDXGFGIO-FKTQTOOFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.215
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.60 α = 90.00
b = 66.60 β = 90.00
c = 338.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-29
  • Released Date: 2013-09-18
  • Deposition author(s): Bhowmik, S., Bolin, J.T.

Revision History

No revisions since initial release