4LQ9

Crystal structure of human norovirus RNA-dependent RNA-polymerase in complex with NAF2

Structural Biology Knowledgebase: 4LQ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LQ9

Classification: VIRAL PROTEIN / REPLICATION INHIBITOR

Total Structure Weight: 59259.30

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-dependent RNA-polymerase A 526 Norovirus Mutation: E153G
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
21D
Query on 21D

A naphthalene-1,5-disulfonic acid
C10 H8 O6 S2
XTEGVFVZDVNBPF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.170
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.57 α = 90.00
b = 111.84 β = 90.00
c = 121.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-17
  • Released Date: 2014-02-12
  • Deposition author(s): Milani, M., Tarantino, D., Mastrangelo, E., Croci, R.

Revision History

No revisions since initial release