4LPQ

Crystal structure of the L,D-transpeptidase (residues 123-326) from Xylanimonas cellulosilytica DSM 15894

Structural Biology Knowledgebase: 4LPQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.146
  • R-Value Work: 0.122

Literature

Macromolecules
Sequence Display for 4LPQ

Classification: TRANSFERASE

Total Structure Weight: 23170.91

Macromolecule Entities
Molecule Chains Length Organism Details
ErfK/YbiS/YcfS/YnhG family protein A 207 Xylanimonas cellulosilytica Gene Name(s): Xcel_0604
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.146
  • R-Value Work: 0.122
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 62.85 α = 90.00
b = 62.85 β = 90.00
c = 167.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-16
  • Released Date: 2013-11-13
  • Deposition author(s): Nocek, B., Bigelow, L., Endres, M., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release