Crystal structure of AFT2 in complex with DNA
DOI:10.2210/pdb4lmg/pdb   NDB ID: NA2600
4LMG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription Activator/dna
    Structure Weight: 89406.02
    Molecule: Iron-regulated transcriptional activator AFT2
    Polymer: 1 Type: protein Length: 157
    Chains: A, B, C, D
    Fragment: UNP RESIDUES 38-193
    Organism: Saccharomyces cerevisiae S288c
    Gene Names: AFT2 YPL202C
    UniProtKB: Protein Feature View | Search PDB | Q08957  
    Molecule: 5'-D(*TP*AP*AP*TP*GP*GP*GP*TP*GP*CP*AP*CP*T)-3'
    Polymer: 2 Type: dna Length: 13
    Chains: E, G
    Details: PROMOTER REGION FRAGMENT
    Molecule: 5'-D(*AP*AP*GP*TP*GP*CP*AP*CP*CP*CP*AP*TP*T)-3'
    Polymer: 3 Type: dna Length: 13
    Chains: F, H
    Details: PROMOTER REGION FRAGMENT
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2600
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Poor, C.B.,  Sanishvili, R.,  Schuermann, J.P.,  He, C.

    Deposition:   2013-07-10
    Release:   2014-03-05
    Last Modified (REVDAT):   2014-04-23
     
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    2014-04-23
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.20
    R-Value: 0.192 (obs.)
    R-Free: 0.236
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 41.54 α = 90.00 
    b = 127.45 β = 90.04 
    c = 70.77 γ = 90.00