4LGD

Structural Basis for Autoactivation of Human Mst2 Kinase and Its Regulation by RASSF5

Structural Biology Knowledgebase: 4LGD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LGD

Classification: SIGNALING PROTEIN

Total Structure Weight: 201416.39

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase 3 A, B, C, D 378 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: kinase domain, SARAH domain, UNP residues 1-313, 428-491
Mutation: D146N
Gene Name(s): STK3 Gene View KRS1 MST2
Ras association domain family member 5, RASSF5 E, F, G, H 49 Homo sapiens Fragment: SARAH domain, UNP residues 365-413
Gene Name(s): RASSF5 Gene View NORE1 RAPL

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.199
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 123.40 α = 90.00
b = 237.14 β = 100.70
c = 95.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-27
  • Released Date: 2013-09-18
  • Deposition author(s): Luo, X., Ni, L., Tomchick, D.R.

Revision History

  • 2013-10-30
    Type: Citation | Details: Citation update