Crystal structure MBD4 MBD domain in complex with methylated CpG DNA
DOI:10.2210/pdb4lg7/pdb   NDB ID: NA2517
4LG7
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 15179.98
    Molecule: Methyl-CpG-binding domain protein 4
    Polymer: 1 Type: protein Length: 68
    Chains: A
    EC#: 3.2.2   
    Fragment: UNP residues 83-149
    Organism: Homo sapiens
    Gene Names: Gene View for MBD4 Gene View for MED1
    UniProtKB: Protein Feature View | Search PDB | O95243  
    Molecule: DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3')
    Polymer: 2 Type: dna Length: 12
    Chains: B, C
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    UNX
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    UNX X
    UNKNOWN ATOM OR ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5CM
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    5CM C10 H16 N3 O7 P DC dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2517
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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