4LFG

Crystal structure of geranylgeranyl diphosphate synthase sub1274 (target efi-509455) from streptococcus uberis 0140j with bound magnesium and isopentyl diphosphate, fully liganded complex;


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.153

Literature

Macromolecules
Sequence Display for 4LFG

Classification: TRANSFERASE

Total Structure Weight: 65726.60

Macromolecule Entities
Molecule Chains Length Organism Details
Geranylgeranyl Diphosphate Synthase A, B 290 Streptococcus uberis EC#: 2.5.1.10 IUBMB
Gene Name(s): fps SUB1274
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPE
Query on IPE

A, B 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
ISOPENTENYL PYROPHOSPHATE (Synonym)
C5 H12 O7 P2
NUHSROFQTUXZQQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.153
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.39 α = 90.00
b = 74.33 β = 90.00
c = 124.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-26
  • Released Date: 2013-07-10
  • Deposition author(s): Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Al Obaidi, N., Stead, M., Love, J., Poulter, C.D., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (Efi)

Revision History

  • Version 1_0: 2013-07-10

    Type: Initial release