4LDY

Crystal structure of the DNA binding domain of the G245A mutant of arabidopsis thaliana auxin reponse factor 1

Structural Biology Knowledgebase: 4LDY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LDY

Classification: TRANSCRIPTION

Total Structure Weight: 82258.38

Macromolecule Entities
Molecule Chains Length Organism Details
Auxin response factor 1 A, B 362 Arabidopsis thaliana Fragment: DNA Binding Domain, UNP residues 1-355
Mutation: G245A
Gene Name(s): ARF1 Gene View At1g59750 F23H11.7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.210
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.10 α = 90.00
b = 84.24 β = 114.76
c = 78.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-25
  • Released Date: 2014-02-12
  • Deposition author(s): Boer, D.R., Freire-Rios, A., van den Berg, W.M.A., Weijers, D., Coll, M.

Revision History

No revisions since initial release