4LCE

CtBP1 in complex with substrate MTOB

Structural Biology Knowledgebase: 4LCE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LCE

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE SUBSTRATE

Total Structure Weight: 38951.38

Macromolecule Entities
Molecule Chains Length Organism Details
C-terminal-binding protein 1 A 347 Homo sapiens EC#: 1.1.1 IUBMB
Fragment: Dehydrogenase Domain (UNP residues 28-353)
Gene Name(s): CTBP1 Gene View CTBP

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
KMT
Query on KMT

A 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID
C5 H8 O3 S
SXFSQZDSUWACKX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
KMT Kd: 1260000 - 2960000 nM (88 - 100) BindingDB
ΔG: -16 - -14 kJ/mol (88 - 100) BindingDB
ΔH: -47.3 - -14 kJ/mol (88 - 100) BindingDB
-TΔS: 32.2 kJ/mol (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.200
  • Space Group: P 64 2 2

Unit Cell:

Length (Å) Angle (°)
a = 88.97 α = 90.00
b = 88.97 β = 90.00
c = 161.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-21
  • Released Date: 2014-03-19
  • Deposition author(s): Hilbert, B.J., Schiffer, C.A., Royer Jr., W.E.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2014-05-14
    Type: Citation | Details: Citation update
  • 2014-04-09
    Type: Citation | Details: Citation update