4LAB

Crystal structure of the catalytic domain of RluB

Structural Biology Knowledgebase: 4LAB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.231

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LAB

Classification: RNA binding protein

Total Structure Weight: 28978.43

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal large subunit pseudouridine synthase B A 255 Escherichia coli EC#: 5.4.99.22 IUBMB
Fragment: UNP Residues 1-251
Gene Name(s): rluB yciL b1269 JW1261

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PT
Query on PT

A PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.231
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.39 α = 90.00
b = 82.39 β = 90.00
c = 74.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-19
  • Released Date: 2013-11-20
  • Deposition author(s): Czudnochowski, N., Finer-Moore, J.S., Stroud, R.M.

Revision History

  • 2014-02-26
    Type: Citation | Details: Citation update