4L9O

Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 4L9O

Classification: PROTEIN TRANSPORT

Total Structure Weight: 77471.76

Macromolecule Entities
Molecule Chains Length Organism Details
Sec16,Protein transport protein SEC13 A, B 349 Komagataella pastoris Komagataella phaffii Fragment: unp residues 2-289, unp residues 1030-1076,unp residues 2-289, unp residues 1030-1076,unp residues 2-289, unp residues 1030-1076,unp residues 2-289, unp residues 1030-1076
Gene Name(s): SEC13 Gene View PAS_chr1-3_0057 SEC16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.173
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 70.51 α = 90.00
b = 49.32 β = 111.70
c = 90.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-18
  • Released Date: 2013-10-02
  • Deposition author(s): McMahon, C., Jeffrey, P.D., Hughson, F.M.

Revision History

  • Version 1_0: 2013-10-02

    Type: Initial release

  • Version 1_1: 2014-02-05

    Type: Database references

  • Version 1_2: 2017-06-21

    Type: Database references, Source and taxonomy, Structure summary