4L7M

Crystal structure of the archaeal HEAT-like repeats protein TON_1937 from Thermococcus onnurineus NA1

PDB DOI: https://doi.org/10.2210/pdb4L7M/pdb
Entry: 4L7M supersedes: 3B2A

Classification: UNKNOWN FUNCTION
Organism(s): Thermococcus onnurineus NA1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-06-14 Released: 2013-07-10
Deposition Author(s): Kim, Y.G., Jeong, J.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.236
R-Value Work: 0.202
R-Value Observed: 0.204

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the archaeal HEAT-like repeats protein TON_1937 from Thermococcus onnurineus NA1

Kim, Y.G., Jeong, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 61.02 kDa
Atom Count: 4,183
Modelled Residue Count: 522
Deposited Residue Count: 538
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A, B	269	Thermococcus onnurineus NA1	Mutation(s): 0 Gene Names: Thermococcus Onnurineus, TON_1937
UniProt
Find proteins for B6YW62 (Thermococcus onnurineus (strain NA1)) Explore B6YW62 Go to UniProtKB: B6YW62
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B6YW62
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth B] MOL2 format, chain C [auth B] MOL2 format, chain D [auth B]	C [auth B], D [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Focus chain D [auth B] Interactions & Density Focus chain C [auth B] Focus chain D [auth B]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.236
R-Value Work: 0.202
R-Value Observed: 0.204
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 183.911	α = 90
b = 42.445	β = 107.07
c = 77.215	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-07-10

Deposition Author(s):

This entry supersedes: 3B2A

Revision History (Full details and data files)

Version 1.0: 2013-07-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.