4KRC

Crystal Structure of Pho85-Pcl10-ATP-gamma-S Complex

Structural Biology Knowledgebase: 4KRC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.204

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KRC

Classification: Transferase / Signaling Protein

Total Structure Weight: 60657.35

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent protein kinase PHO85 A 317 Saccharomyces cerevisiae EC#: 2.7.11.22 IUBMB
Gene Name(s): PHO85 SSG3 YPL031C P7102.18A
PHO85 cyclin-10 B 207 Saccharomyces cerevisiae Fragment: UNP residues 227-433
Gene Name(s): PCL10 YGL134W G2838

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGS
Query on AGS

A PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'- (GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE (Synonym)
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.204
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.15 α = 90.00
b = 65.38 β = 100.61
c = 80.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-16
  • Released Date: 2013-09-18
  • Deposition author(s): Quiocho, F.A., Zheng, F.

Revision History

  • 2013-11-13
    Type: Citation | Details: Citation update
  • 2013-10-02
    Type: Citation | Details: Citation update