4KMO

Crystal Structure of the Vps33-Vps16 HOPS subcomplex from Chaetomium thermophilum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 4KMO

Classification: TRANSPORT PROTEIN

Total Structure Weight: 112748.70

Macromolecule Entities
Molecule Chains Length Organism Details
Small conjugating protein ligase-like protein A 669 Chaetomium thermophilum Gene Name(s): CTHT_0057760
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Putative vacuolar protein sorting-associated protein B 333 Chaetomium thermophilum Gene Name(s): CTHT_0026760
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.225
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 100.27 α = 90.00
b = 100.27 β = 90.00
c = 176.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-08
  • Released Date: 2013-06-26
  • Deposition author(s): Baker, R.W., Jeffrey, P.D., Hughson, F.M.

Revision History

  • Version 1_0: 2013-06-26

    Type: Initial release

  • Version 1_1: 2013-07-10

    Type: Database references

  • Version 1_2: 2014-09-24

    Type: Database references