4KKJ

Crystal Structure of Haptocorrin in Complex with Cbi

Structural Biology Knowledgebase: 4KKJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.204

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KKJ

Classification: TRANSPORT PROTEIN

Total Structure Weight: 54787.89

Macromolecule Entities
Molecule Chains Length Organism Details
Transcobalamin-1 A 467 Homo sapiens Gene Name(s): TCN1 Gene View TC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CBY
Query on CBY

A COB(II)INAMIDE
C48 H72 Co N11 O8
GFVWZOGCSKVPRA-NZMQITGIDF
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYN
Query on CYN

A CYANIDE ION
C N
XFXPMWWXUTWYJX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.204
  • Space Group: P 64
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 150.38 α = 90.00
b = 150.38 β = 90.00
c = 60.28 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-06
  • Released Date: 2013-07-17
  • Deposition author(s): Furger, E., Frei, D.C., Schibli, R., Fischer, E., Prota, A.E.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update