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70S Ribosome translocation intermediate FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT A CAN BE FOUND IN 4KDA. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD8 (30S) AND 4KD9 (50S).
DOI:10.2210/pdb4kdb/pdb   NDB ID: NA2444
4KDB
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
4KD8   4KD9   4KDA   4KDB  
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The complete entry has been assigned PDB ID 4V9L and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v9l.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v9l.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome/antibiotic
    Structure Weight: 1413811.18
    Molecule: 50S ribosomal protein L1
    Polymer: 1 Type: protein Length: 228
    Chains: C
    Organism: Thermus thermophilus HB27
    Gene Names: rplA TT_C1739
    UniProtKB: Protein Feature View | Search PDB | Q72GV9  
    Molecule: 50S ribosomal protein L2
    Polymer: 2 Type: protein Length: 275
    Chains: D
    Organism: Thermus thermophilus HB27
    Gene Names: rplB TT_C1325
    UniProtKB: Protein Feature View | Search PDB | Q72I07  
    Molecule: 50S ribosomal protein L3
    Polymer: 3 Type: protein Length: 205
    Chains: E
    Organism: Thermus thermophilus HB27
    Gene Names: rplC TT_C1328
    UniProtKB: Protein Feature View | Search PDB | Q72I04  
    Molecule: 50S ribosomal protein L4
    Polymer: 4 Type: protein Length: 208
    Chains: F
    Organism: Thermus thermophilus HB27
    Gene Names: rplD TT_C1327
    UniProtKB: Protein Feature View | Search PDB | Q72I05  
    Molecule: 50S ribosomal protein L5
    Polymer: 5 Type: protein Length: 181
    Chains: G
    Organism: Thermus thermophilus HB27
    Gene Names: rplE TT_C1316
    UniProtKB: Protein Feature View | Search PDB | Q72I16  
    Molecule: 50S ribosomal protein L6
    Polymer: 6 Type: protein Length: 167
    Chains: H
    Organism: Thermus thermophilus HB27
    Gene Names: rplF TT_C1313
    UniProtKB: Protein Feature View | Search PDB | Q72I19  
    Molecule: 50S ribosomal protein L10
    Polymer: 7 Type: protein Length: 170
    Chains: J
    Organism: Thermus thermophilus HB27
    Molecule: 50S ribosomal protein L11
    Polymer: 8 Type: protein Length: 140
    Chains: K
    Organism: Thermus thermophilus HB27
    Gene Names: rplK TT_C1738
    UniProtKB: Protein Feature View | Search PDB | P62442  
    Molecule: 50S ribosomal protein L13
    Polymer: 9 Type: protein Length: 138
    Chains: N
    Organism: Thermus thermophilus HB27
    Gene Names: rplM TT_C1101
    UniProtKB: Protein Feature View | Search PDB | Q72IN1  
    Molecule: 50S ribosomal protein L14
    Polymer: 10 Type: protein Length: 122
    Chains: O
    Organism: Thermus thermophilus HB27
    Gene Names: rplN TT_C1318
    UniProtKB: Protein Feature View | Search PDB | Q72I14  
    Molecule: 50S ribosomal protein L15
    Polymer: 11 Type: protein Length: 146
    Chains: P
    Organism: Thermus thermophilus HB27
    Gene Names: rplO TT_C1309
    UniProtKB: Protein Feature View | Search PDB | Q72I23  
    Molecule: 50S ribosomal protein L16
    Polymer: 12 Type: protein Length: 141
    Chains: Q
    Organism: Thermus thermophilus HB27
    Gene Names: rplP TT_C1321
    UniProtKB: Protein Feature View | Search PDB | Q72I11  
    Molecule: 50S ribosomal protein L17
    Polymer: 13 Type: protein Length: 117
    Chains: R
    Organism: Thermus thermophilus HB27
    Gene Names: rplQ TT_C1299
    UniProtKB: Protein Feature View | Search PDB | Q72I33  
    Molecule: 50S ribosomal protein L18
    Polymer: 14 Type: protein Length: 99
    Chains: S
    Organism: Thermus thermophilus HB27
    Gene Names: rplR TT_C1312
    UniProtKB: Protein Feature View | Search PDB | Q72I20  
    Molecule: 50S ribosomal protein L19
    Polymer: 15 Type: protein Length: 138
    Chains: T
    Organism: Thermus thermophilus HB27
    Gene Names: rplS TT_C0669
    UniProtKB: Protein Feature View | Search PDB | Q72JU9  
    Molecule: 50S ribosomal protein L20
    Polymer: 16 Type: protein Length: 117
    Chains: U
    Organism: Thermus thermophilus HB27
    Gene Names: rplT TT_C0185
    UniProtKB: Protein Feature View | Search PDB | Q72L76  
    Molecule: 50S ribosomal protein L21
    Polymer: 17 Type: protein Length: 101
    Chains: V
    Organism: Thermus thermophilus HB27
    Gene Names: rplU TT_C1424
    UniProtKB: Protein Feature View | Search PDB | Q72HR2  
    Molecule: 50S ribosomal protein L22
    Polymer: 18 Type: protein Length: 113
    Chains: W
    Organism: Thermus thermophilus HB27
    Gene Names: rplV TT_C1323
    UniProtKB: Protein Feature View | Search PDB | Q72I09  
    Molecule: 50S ribosomal protein L23
    Polymer: 19 Type: protein Length: 93
    Chains: X
    Organism: Thermus thermophilus HB27
    Gene Names: rplW TT_C1326
    UniProtKB: Protein Feature View | Search PDB | Q72I06  
    Molecule: 50S ribosomal protein L24
    Polymer: 20 Type: protein Length: 107
    Chains: Y
    Organism: Thermus thermophilus HB27
    Gene Names: rplX TT_C1317
    UniProtKB: Protein Feature View | Search PDB | Q72I15  
    Molecule: 50S ribosomal protein L25
    Polymer: 21 Type: protein Length: 185
    Chains: Z
    Organism: Thermus thermophilus HB27
    Gene Names: rplY ctc TT_C1225
    UniProtKB: Protein Feature View | Search PDB | Q72IA7  
    Molecule: 50S ribosomal protein L27
    Polymer: 22 Type: protein Length: 84
    Chains: 0
    Organism: Thermus thermophilus HB27
    Gene Names: rpmA TT_C1423
    UniProtKB: Protein Feature View | Search PDB | Q72HR3  
    Molecule: 50S ribosomal protein L29
    Polymer: 23 Type: protein Length: 71
    Chains: 2
    Organism: Thermus thermophilus HB27
    Gene Names: rpmC TT_C1320
    UniProtKB: Protein Feature View | Search PDB | Q72I12  
    Molecule: 50S ribosomal protein L30
    Polymer: 24 Type: protein Length: 60
    Chains: 3
    Organism: Thermus thermophilus HB27
    Gene Names: rpmD TT_C1310
    UniProtKB: Protein Feature View | Search PDB | Q72I22  
    Molecule: 50S ribosomal protein L32
    Polymer: 25 Type: protein Length: 59
    Chains: 5
    Organism: Thermus thermophilus HB27
    Gene Names: rpmF rpl32 TT_C0050
    UniProtKB: Protein Feature View | Search PDB | P62652  
    Molecule: 50S ribosomal protein L33
    Polymer: 26 Type: protein Length: 50
    Chains: 6
    Organism: Thermus thermophilus HB27
    Gene Names: rpmG TT_C1735
    UniProtKB: Protein Feature View | Search PDB | Q72GW3  
    Molecule: 50S ribosomal protein L34
    Polymer: 27 Type: protein Length: 49
    Chains: 7
    Organism: Thermus thermophilus HB27
    Gene Names: rpmH rpl34 TTHA0446
    UniProtKB: Protein Feature View | Search PDB | P80340  
    Molecule: 50S ribosomal protein L35
    Polymer: 28 Type: protein Length: 64
    Chains: 8
    Organism: Thermus thermophilus HB27
    Gene Names: rpmI TT_C0184
    UniProtKB: Protein Feature View | Search PDB | Q72L77  
    Molecule: 50S ribosomal protein L36
    Polymer: 29 Type: protein Length: 37
    Chains: 9
    Organism: Thermus thermophilus HB27
    Gene Names: rpmJ TT_C1304
    UniProtKB: Protein Feature View | Search PDB | Q72I28  
    Molecule: 50S ribosomal protein L7/L12
    Polymer: 30 Type: protein Length: 102
    Chains: e
    Organism: Thermus thermophilus HB27
    Gene Names: rplL TT_C1776
    UniProtKB: Protein Feature View | Search PDB | Q72GS2  
    Molecule: 50S ribosomal protein L7/L12
    Polymer: 31 Type: protein Length: 31
    Chains: f, g
    Organism: Thermus thermophilus HB27
    Molecule: 50S ribosomal protein L7/L12
    Polymer: 32 Type: protein Length: 30
    Chains: h
    Organism: Thermus thermophilus HB27
    Molecule: 50S ribosomal protein L28
    Polymer: 33 Type: protein Length: 93
    Chains: 1
    Organism: Thermus thermophilus HB27
    Gene Names: rpmB TT_C1964
    UniProtKB: Protein Feature View | Search PDB | Q72G84  
    Molecule: 50S ribosomal protein L31
    Polymer: 34 Type: protein Length: 35
    Chains: 4
    Organism: Thermus thermophilus HB27
    Gene Names: rpmE TT_C0708
    UniProtKB: Protein Feature View | Search PDB | Q72JR0  
    Molecule: 23S ribosomal RNA
    Polymer: 35 Type: rna Length: 2879
    Chains: A
    Organism: Thermus thermophilus HB27
    Molecule: 5S ribosomal RNA
    Polymer: 36 Type: rna Length: 119
    Chains: B
    Organism: Thermus thermophilus HB27
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 32
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 33
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 34
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 35
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 36
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2444
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (4KD8 and 4KD9)