4KB8

CK1d in complex with 1-{4-[3-(4-FLUOROPHENYL)-1-METHYL-1H-PYRAZOL-4-YL]PYRIDIN-2-YL}-N-METHYLMETHANAMINE ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 4KB8

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 156034.70

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform delta A, B, C, D 331 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): CSNK1D Gene View HCKID
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1QN
Query on 1QN

A, C 1-{4-[3-(4-fluorophenyl)-1-methyl-1H-pyrazol- 4-yl]pyridin-2-yl}-N-methylmethanamine
C17 H17 F N4
UEPOHWWKVBWCFV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1QO
Query on 1QO

B, D N-benzyl-4-(pyridin-3-yl)pyrimidin-2-amine
C16 H14 N4
JTYLHRZXSYVYMO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1QN IC50: 13 - 67 nM (95 - 100) BindingDB

IC50: 3040 nM  BindingMOAD
IC50: 12.9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.205
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 49.01 α = 107.90
b = 84.54 β = 105.87
c = 89.51 γ = 93.08

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-23
  • Released Date: 2013-09-18
  • Deposition author(s): Liu, S.

Revision History

  • 2013-09-25
    Type: Database references