4K8N

Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 18:1 Ceramide-1-Phosphate (18:1-C1P)

Structural Biology Knowledgebase: 4K8N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K8N

Classification: LIPID TRANSPORT

Total Structure Weight: 150769.37

Macromolecule Entities
Molecule Chains Length Organism Details
Glycolipid transfer protein domain-containing protein 1 A, B, C..., D, E, FA, B, C, D, E, F 215 Homo sapiens Gene Name(s): CPTP Gene View GLTPD1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1Q0
Query on 1Q0

A, B, C, D, E, F (2S,3R,4Z)-3-hydroxy-2-[(9E)-octadec-9-enoylamino]octadec- 4-en-1-yl dihydrogen phosphate
C36 H70 N O6 P
HOOJDMQIUTXSPU-GINUSHNTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.225
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 236.98 α = 90.00
b = 128.76 β = 93.53
c = 66.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-18
  • Released Date: 2013-07-17
  • Deposition author(s): Simanshu, D.K., Brown, R.E., Patel, D.J.

Revision History

  • 2013-09-11
    Type: Citation | Details: Citation update