4K84

Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 16:0 ceramide-1-phosphate (16:0-C1P)

Structural Biology Knowledgebase: 4K84 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K84

Classification: LIPID TRANSPORT

Total Structure Weight: 50204.38

Macromolecule Entities
Molecule Chains Length Organism Details
Glycolipid transfer protein domain-containing protein 1 A, B 215 Homo sapiens Gene Name(s): CPTP Gene View GLTPD1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PX
Query on 1PX

A, B (2S,3R,4E)-2-(hexadecanoylamino)-3-hydroxyoctadec- 4-en-1-yl dihydrogen phosphate
C34 H68 N O6 P
UNRULDRRONAKLU-TURZORIXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.162
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.60 α = 90.00
b = 50.29 β = 100.11
c = 62.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-17
  • Released Date: 2013-07-17
  • Deposition author(s): Simanshu, D.K., Brown, R.E., Patel, D.J.

Revision History

  • 2013-09-11
    Type: Citation | Details: Citation update