4K80

Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 2:0 ceramide-1-phosphate (2:0-C1P)

Structural Biology Knowledgebase: 4K80 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K80

Classification: LIPID TRANSPORT

Total Structure Weight: 24905.81

Macromolecule Entities
Molecule Chains Length Organism Details
Glycolipid transfer protein domain-containing protein 1 A 215 Homo sapiens Gene Name(s): CPTP Gene View GLTPD1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PW
Query on 1PW

A (2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec- 4-en-1-yl dihydrogen phosphate
C20 H40 N O6 P
HWPZKJVGDYNEAW-QUDYQQOWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.168
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.43 α = 90.00
b = 74.43 β = 90.00
c = 105.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-17
  • Released Date: 2013-07-17
  • Deposition author(s): Simanshu, D.K., Brown, R.E., Patel, D.J.

Revision History

  • 2013-09-11
    Type: Citation | Details: Citation update