4K6L

Structure of Typhoid Toxin

Structural Biology Knowledgebase: 4K6L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K6L

Classification: TOXIN

Total Structure Weight: 116819.55

Macromolecule Entities
Molecule Chains Length Organism Details
Putative pertussis-like toxin subunit A, B, C, D, E 114 Salmonella enterica Fragment: unp residues 24-137
Gene Name(s): STY1891 t1107 ACT03_01090 ACT04_14595 ERS083263_04672 ERS163563_04589 ERS207147_04606 ERS223215_04768 ERS223428_04645 ERS223489_04549 ERS223535_04697 ERS223550_04568 ERS248933_04664 ERS248974_04478 ERS325172_04569 ERS325188_04657 ERS325190_04782 ERS325196_04651 ERS325215_04544 ERS325223_04698 ERS325225_04622 ERS325232_04628 ERS325296_04699 ERS325302_04540 ERS325320_04825 ERS325374_04644 ERS325389_04575 ERS325400_04543 ERS325434_04662 ERS325436_04645 ERS325437_04554 ERS325458_04575 ERS326239_04579 ERS326267_04552 ERS326315_04377 ERS326329_04546 ERS326384_04581 ERS326389_04539 ERS326420_04538 ERS326442_04567 ERS326462_04565 ERS326471_04554 ERS326499_04707 ERS327392_04657
Cytolethal distending toxin subunit B homolog F 255 Salmonella enterica EC#: 3.1 IUBMB
Fragment: unp residues 23-269
Gene Name(s): cdtB STY1886 t1111
Putative pertussis-like toxin subunit G 224 Salmonella enterica EC#: 2.4.2 IUBMB
Fragment: unp residues 19-242
Gene Name(s): ptxA STY1890 t1108 ACT03_01095 ACT04_14590 ERS083263_04673 ERS163563_04590 ERS207147_04605 ERS223215_04767 ERS223428_04644 ERS223489_04550 ERS223535_04698 ERS223550_04569 ERS248933_04663 ERS248974_04479 ERS325172_04568 ERS325188_04658 ERS325190_04781 ERS325196_04652 ERS325215_04545 ERS325223_04697 ERS325225_04623 ERS325232_04629 ERS325296_04698 ERS325302_04541 ERS325320_04824 ERS325374_04643 ERS325389_04576 ERS325400_04544 ERS325434_04661 ERS325436_04646 ERS325437_04555 ERS325458_04576 ERS326239_04580 ERS326267_04553 ERS326315_04378 ERS326329_04547 ERS326384_04580 ERS326389_04540 ERS326420_04539 ERS326442_04566 ERS326462_04564 ERS326471_04555 ERS326499_04706 ERS327392_04656

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D, E, F, G GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.207
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 78.39 α = 90.00
b = 261.08 β = 90.00
c = 109.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-16
  • Released Date: 2013-07-17
  • Deposition author(s): Gao, X., Song, J., Galan, J.

Revision History

  • 2014-10-29
    Type: Entry authorship | Details: --
  • 2013-07-31
    Type: Citation | Details: Citation update
  • 2013-07-24
    Type: Citation | Details: Citation update