4K4Y

Coxsackievirus B3 polymerase elongation complex (r2+1_form)

Structural Biology Knowledgebase: 4K4Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K4Y

Classification: Transferase / rna

Total Structure Weight: 279204.00


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-dependent RNA polymerase A, E, I, M 472 Enterovirus b Mutation: L252I
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3') B, F, J, N 24 synthetic
DNA/RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(DOC))-3') C, G, K, O 15 synthetic
RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') D, H, L, P 9 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCT
Query on DCT

A, E, I, M 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE
C9 H16 N3 O12 P3
ARLKCWCREKRROD-POYBYMJQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, E, I, M GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, E, I ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DOC
Query on DOC
C, G, K, O DNA LINKING C9 H14 N3 O6 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.199
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.37 α = 89.92
b = 60.40 β = 89.96
c = 194.03 γ = 79.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-12
  • Released Date: 2013-05-29
  • Deposition author(s): Gong, P., Peersen, O.B.

Revision History

  • 2015-05-20
    Type: Polymer description | Details: --
  • 2013-07-03
    Type: Citation | Details: Citation update