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Poliovirus polymerase elongation complex (r5+1_form)
DOI:10.2210/pdb4k4v/pdb   NDB ID: NA2349
4K4V
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/rna
    Structure Weight: 135234.65
    Molecule: RNA-directed RNA polymerase 3D-POL
    Polymer: 1 Type: protein Length: 471
    Chains: A, E
    EC#: 2.7.7.48    3.4.22.28   
    Fragment: unp residues 1749-2209
    Mutation: L446D, C290M
    Organism: Human poliovirus 1 Mahoney
    UniProtKB: Protein Feature View | Search PDB | P03300  
    Molecule: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3')
    Polymer: 2 Type: rna Length: 26
    Chains: B, F
    Molecule: DNA/RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-D(P*C)-3')
    Polymer: 3 Type: hybrid Length: 17
    Chains: C, G
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human poliovirus 1   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1RA6   
    3OL6   
    4K4S   
    4K4T   
    4K4U   
    4K4W   
    4K4X   
    4K4Y   
    4K4Z   
    4K50   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2349
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Gong, P.,  Peersen, O.B.

    Deposition:   2013-04-12
    Release:   2013-05-22
    Last Modified (REVDAT):   2013-07-03
     
  •   Revision History    Hide
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    2013-07-03
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.63
    R-Value: 0.235 (obs.)
    R-Free: 0.273
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 63.52 α = 73.48 
    b = 63.47 β = 73.44 
    c = 101.95 γ = 73.64