4K2J

Decameric ring structure of KSHV (HHV-8) latency-associated nuclear antigen (LANA) DNA binding domain

Structural Biology Knowledgebase: 4K2J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4K2J

Classification: DNA BINDING PROTEIN viral protein

Total Structure Weight: 160615.09

Macromolecule Entities
Molecule Chains Length Organism Details
KSHV (HHV-8) latency-associated nuclear antigen (LANA) A, B, C..., D, E, F, G, H, I, JA, B, C, D, E, F, G, H, I, J 140 Human herpesvirus 8 Fragment: DNA binding domain (unp residues 825-963)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMT
Query on FMT

A, C, E, G, I, J FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D, E, F, G, H, I, J CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.182
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.44 α = 90.00
b = 175.18 β = 95.30
c = 97.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-09
  • Released Date: 2013-11-06
  • Deposition author(s): Domsic, J.F., Marmorstein, R.

Revision History

No revisions since initial release