Crystal structure of RARbeta LBD in complex with selective partial agonist BMS641 [3-chloro-4-[(E)-2-(5,5-dimethyl-8-phenyl-5,6-dihydronaphthalen-2-yl)ethenyl]benzoic acid]
4JYI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/agonist
    Structure Weight: 64597.16
    Molecule: Retinoic acid receptor beta
    Polymer: 1 Type: protein Length: 267
    Chains: A, B
    Fragment: Ligand binding domain, UNP residues 176-421
    Organism: Homo sapiens
    Gene Names: Gene View for RARB HAP NR1B2
    UniProtKB: Protein Feature View | Search PDB | P10826  
    Molecule: Nuclear receptor coactivator 1
    Polymer: 2 Type: protein Length: 13
    Chains: F, G
    EC#: 2.3.1.48   
    Fragment: UNP residues 686-698
    Organism: Homo sapiens
    Gene Names: Gene View for NCOA1 BHLHE74 SRC1
    UniProtKB: Protein Feature View | Search PDB | Q15788  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1XAP    
    4DM6    
    4DM8    
    4JYG    
    4JYH    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FLC
    Search 
    Download 
    FLC C6 H5 O7
    CITRATE ANION
    FLC:4JYI
    JYI
    Search 
    Download 
    JYI C27 H23 Cl O2
    3-chloro-4-[(E)-2-(5,5-dimethyl-8-phenyl- 5,6-dihydronaphthalen-2-yl)ethenyl]benzoic acid
    JYI:4JYI
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers: