4JVH

Structure of the star domain of quaking protein in complex with RNA

Structural Biology Knowledgebase: 4JVH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.316
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 4JVH

Classification: RNA BINDING PROTEIN

Total Structure Weight: 27830.18


Macromolecule Entities
Molecule Chains Length Organism Details
Protein quaking A 209 Homo sapiens Fragment: STAR DOMAIN
Gene Name(s): QKI Gene View HKQ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*UP*CP*AP*CP*UP*AP*AP*CP*AP*A)-3') D 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.316
  • R-Value Work: 0.243
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 98.63 α = 90.00
b = 98.63 β = 90.00
c = 103.14 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-25
  • Released Date: 2013-05-08
  • Deposition author(s): Teplova, M., Hafner, M., Teplov, D., Essig, K., Tuschl, T., Patel, D.J.

Revision History

No revisions since initial release