4JP3

Crystal Structure of TT0495 protein from Thermus thermophilus HB8

Structural Biology Knowledgebase: 4JP3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JP3

Classification: OXIDOREDUCTASE

Total Structure Weight: 25895.04

Macromolecule Entities
Molecule Chains Length Organism Details
2-deoxy-D-gluconate 3-dehydrogenase A 239 Thermus thermophilus Gene Name(s): TTHB080
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.164
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.94 α = 90.00
b = 86.87 β = 90.00
c = 91.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-19
  • Released Date: 2014-03-19
  • Deposition author(s): Pampa, K.J., Lokanath, N.K., Kunishima, N., Ravishnkar Rai, V.

Revision History

  • 2014-08-13
    Type: Citation | Details: Citation update