4JO8

Crystal structure of the activating Ly49H receptor in complex with m157 (G1F strain)

Structural Biology Knowledgebase: 4JO8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JO8

Classification: IMMUNE SYSTEM / VIRAL PROTEIN

Total Structure Weight: 49299.51

Macromolecule Entities
Molecule Chains Length Organism Details
M157 A 269 Murid herpesvirus 1 Fragment: UNP residues 29-291
Mutation: P29A, D30G
Killer cell lectin-like receptor 8 B 157 Mus musculus Fragment: UNP residues 107-266
Mutation: R107M, P108G, Y110M
Gene Name(s): Klra8 Ly-49h Ly49-h Ly49H

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.226
  • Space Group: P 31 1 2

Unit Cell:

Length (Å) Angle (°)
a = 87.87 α = 90.00
b = 87.87 β = 90.00
c = 133.37 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-18
  • Released Date: 2013-05-22
  • Deposition author(s): Berry, R., Ng, N., Saunders, P.M., Vivian, J.P., Lin, J., Deuss, F.A., Corbett, A.J., Forbes, C.A., Widjaja, J.M., Sullivan, L.C., McAlister, A.D., Perugini, M.A., Call, M.J., Scalzo, A.A., Degli-Esposti, M.A., Coudert, J.D., Beddoe, T., Brooks, A.G., Rossjohn, J.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update
  • 2013-06-05
    Type: Entry title | Details: Entry title update
  • 2013-06-05
    Type: Citation | Details: Citation update