4JNN

Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine

Structural Biology Knowledgebase: 4JNN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4JNN

Classification: TRANSCRIPTION REGULATOR

Total Structure Weight: 23000.12

Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional regulator A 194 Saccharomonospora viridis Fragment: DNA binding domain and regulatory domain (UNP residues 94-287)
Gene Name(s): Svir_16270
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEN
Query on BEN

A BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 42.79 α = 90.00
b = 109.95 β = 90.00
c = 76.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-15
  • Released Date: 2013-04-10
  • Deposition author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Endres, M., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release