4JNI

Crystal Structure of uPA in complex with its inhibitor 4-bromobenzylamine at pH 4.6

Structural Biology Knowledgebase: 4JNI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.254

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JNI

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 28427.36

Macromolecule Entities
Molecule Chains Length Organism Details
Urokinase-type plasminogen activator U 247 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: catalytic domain
Mutation: C122A, N145Q
Gene Name(s): PLAU Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

U TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PZH
Query on PZH

U 1-(4-BROMOPHENYL)METHANAMINE
4-BROMOBENZYLAMINE (Synonym)
C7 H8 Br N
XRNVSPDQTPVECU-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

U SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.254
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 114.81 α = 90.00
b = 114.81 β = 90.00
c = 40.93 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-15
  • Released Date: 2014-03-19
  • Deposition author(s): Zhang, X., Jiang, L., Zhao, B., Yuan, C., Huang, M.

Revision History

No revisions since initial release