4JN2

An Antidote for Dabigatran

Structural Biology Knowledgebase: 4JN2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JN2

Classification: immune system / inhibitor

Total Structure Weight: 97353.59

Macromolecule Entities
Molecule Chains Length Organism Details
anti dabigatran Fab A, L 219 Mus musculus
anti dabigatran Fab B, H 225 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4CC
Query on 4CC

A, L N-[(2-{[(4-carbamimidoylphenyl)amino]methyl}- 1-methyl-1H-benzimidazol-5-yl)carbonyl]-N- pyridin-2-yl-beta-alanine
C25 H25 N7 O3
YBSJFWOBGCMAKL-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, H, L GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.167
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.16 α = 90.00
b = 223.82 β = 90.00
c = 157.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-14
  • Released Date: 2013-03-27
  • Deposition author(s): Schiele, F., Nar, H.

Revision History

  • 2015-03-11
    Type: Non-polymer description | Details: --
  • 2013-07-24
    Type: Citation | Details: Citation update