4JLK

Human dCK C4S-S74E mutant in complex with UDP and the F2.2.1 inhibitoR (2-[({2-[3-(2-FLUOROETHOXY)-4-METHOXYPHENYL]-5-METHYL-1,3-THIAZOL-4-YL}METHYL)SULFANYL]PYRIMIDINE-4,6-DIAMINE)

Structural Biology Knowledgebase: 4JLK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JLK

Classification: transferase / transferase inhibitor

Total Structure Weight: 67898.15

Macromolecule Entities
Molecule Chains Length Organism Details
Deoxycytidine kinase A, B 280 Homo sapiens EC#: 2.7.1.74 IUBMB
Mutation: C9S, C45S, C59S, S74E, C146S
Gene Name(s): DCK Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1NO
Query on 1NO

A, B 2-[({2-[3-(2-fluoroethoxy)-4-methoxyphenyl]- 5-methyl-1,3-thiazol-4-yl}methyl)sulfanyl]pyrimidine- 4,6-diamine
C18 H20 F N5 O2 S2
KKVXVGPJAGIJNR-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UDP
Query on UDP

A, B URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.167
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 68.60 α = 90.00
b = 68.60 β = 90.00
c = 120.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-12
  • Released Date: 2013-09-18
  • Deposition author(s): Nomme, J., Lavie, A.

Revision History

  • 2013-11-27
    Type: Citation | Details: Citation update