4JKG

Open and closed forms of mixed T1789P+R1865A and R1865A human PRP8 RNase H-like domain with bound Mg ion

Structural Biology Knowledgebase: 4JKG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JKG

Classification: RNA BINDING PROTEIN

Total Structure Weight: 50926.10

Macromolecule Entities
Molecule Chains Length Organism Details
Pre-mRNA-processing-splicing factor 8 A 222 Homo sapiens Fragment: PRP8 RNase H-like domain, UNP residues 1769-1990
Mutation: R1865A
Gene Name(s): PRPF8 Gene View PRPC8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pre-mRNA-processing-splicing factor 8 B 222 Homo sapiens Fragment: PRP8 RNase H-like domain, UNP residues 1769-1990
Mutation: T1789P, R1865A
Gene Name(s): PRPF8 Gene View PRPC8

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.198
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.30 α = 90.00
b = 77.95 β = 90.00
c = 94.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-09
  • Released Date: 2013-05-22
  • Deposition author(s): Schellenberg, M.J., Wu, T., Ritchie, D.B., Atta, K.A., MacMillan, A.M.

Revision History

  • 2013-06-26
    Type: Citation | Details: Citation update
  • 2013-06-19
    Type: Citation | Details: Citation update