4JGQ

The crystal structure of sporulation kinase D mutant sensor domain, r131a, from Bacillus subtilis subsp in co-crystallization with pyruvate

Structural Biology Knowledgebase: 4JGQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 4JGQ

Classification: TRANSFERASE

Total Structure Weight: 49100.83

Macromolecule Entities
Molecule Chains Length Organism Details
Sporulation kinase D A, B 217 Bacillus subtilis EC#: 2.7.13.3 IUBMB
Fragment: SENSOR DOMAIN (UNP RESIDUES 37-250)
Mutation: R131A
Gene Name(s): kinD ykvD BSU13660
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACY
Query on ACY

A, B ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 75.74 α = 90.00
b = 82.97 β = 90.00
c = 91.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-01
  • Released Date: 2013-05-15
  • Deposition author(s): Wu, R., Schiffer, M., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
  • Previous versions: 4DAK

Revision History

No revisions since initial release