4JGO

The crystal structure of sporulation kinase d sensor domain from Bacillus subtilis subsp.

Structural Biology Knowledgebase: 4JGO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 4JGO

Classification: TRANSFERASE

Total Structure Weight: 50157.93

Macromolecule Entities
Molecule Chains Length Organism Details
Sporulation kinase D A, B 217 Bacillus subtilis EC#: 2.7.13.3 IUBMB
Fragment: Sensor domain (UNP residues 37-250)
Gene Name(s): kinD ykvD BSU13660
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PYR
Query on PYR

A, B PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 76.11 α = 90.00
b = 82.53 β = 90.00
c = 90.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-01
  • Released Date: 2013-05-15
  • Deposition author(s): Wu, R., Schiffer, M., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
  • Previous versions: 3FOS 4DBJ

Revision History

No revisions since initial release