4JGC

Human TDG N140A mutant IN A COMPLEX WITH 5-carboxylcytosine (5caC)

Structural Biology Knowledgebase: 4JGC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JGC

Classification: HYDROLASE / DNA

Total Structure Weight: 40303.04


Macromolecule Entities
Molecule Chains Length Organism Details
G/T mismatch-specific thymine DNA glycosylase A 204 Homo sapiens EC#: 3.2.2.29 IUBMB
Fragment: UNP residues 111-308
Mutation: N140A
Gene Name(s): TDG Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
oligonucleotide C 28 synthetic
oligonucleotide containing 5-carboxylcytosine D 28 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1RT
Query on 1RT

D 4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid
C5 H5 N3 O3
BLQMCTXZEMGOJM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ORP
Query on ORP
D SACCHARIDE C5 H11 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.230
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.49 α = 90.00
b = 53.56 β = 95.10
c = 81.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-28
  • Released Date: 2013-05-29
  • Deposition author(s): Hashimoto, H., Zhang, X., Cheng, X.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update