4JDY

Crystal structure of Rv2606c

Structural Biology Knowledgebase: 4JDY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JDY

Classification: LYASE

Total Structure Weight: 83835.88

Macromolecule Entities
Molecule Chains Length Organism Details
Pyridoxal biosynthesis lyase PdxS A, B, C 264 Mycobacterium tuberculosis Fragment: UNP residues 11-274
Gene Name(s): pdxS Rv2606c MTCY1A10.27

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.183
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 110.75 α = 90.00
b = 126.08 β = 90.00
c = 180.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-25
  • Released Date: 2013-05-22
  • Deposition author(s): Kim, S., Kim, K.-J.

Revision History

No revisions since initial release