4JD2

Crystal structure of Bos taurus Arp2/3 complex binding with Mus musculus GMF

Structural Biology Knowledgebase: 4JD2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.08 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JD2

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 242456.78

Macromolecule Entities
Molecule Chains Length Organism Details
Actin-related protein 3 A 418 Bos taurus Gene Name(s): ACTR3 Gene View ARP3
Actin-related protein 2 B 394 Bos taurus Gene Name(s): ACTR2 Gene View ARP2
Actin-related protein 2/3 complex subunit 1B C 372 Bos taurus Gene Name(s): ARPC1B Gene View
Actin-related protein 2/3 complex subunit 2 D 300 Bos taurus Gene Name(s): ARPC2 Gene View
Actin-related protein 2/3 complex subunit 3 E 178 Bos taurus Gene Name(s): ARPC3 Gene View
Actin-related protein 2/3 complex subunit 4 F 168 Bos taurus Gene Name(s): ARPC4 Gene View
Actin-related protein 2/3 complex subunit 5 G 151 Bos taurus Gene Name(s): ARPC5 Gene View
Glia maturation factor gamma H 142 Mus musculus Gene Name(s): Gmfg

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PG4
Query on PG4

B, F TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.08 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.209
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 231.54 α = 90.00
b = 231.54 β = 90.00
c = 109.74 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-22
  • Released Date: 2013-07-17
  • Deposition author(s): Nolen, B.J., Luan, Q.

Revision History

  • 2013-09-18
    Type: Citation | Details: Citation update
  • 2013-08-14
    Type: Citation | Details: Citation update
  • 2013-07-24
    Type: Citation | Details: citation update