4JBV

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1268

Structural Biology Knowledgebase: 4JBV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JBV

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 55672.06

Macromolecule Entities
Molecule Chains Length Organism Details
Calmodulin-domain protein kinase 1 A 484 Toxoplasma gondii EC#: 2.7.11.17 IUBMB
Gene Name(s): CDPK1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
V68
Query on V68

A 1-[(1-methylpiperidin-4-yl)methyl]-3-[6-(2- methylpropoxy)naphthalen-2-yl]pyrazolo[3,4- d]pyrimidin-4-amine
C26 H32 N6 O
GOKRPYKIPRDTFC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
V68 N/A in BindingDB
IC50: 3 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.21 α = 90.00
b = 72.28 β = 103.95
c = 66.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-20
  • Released Date: 2014-03-19
  • Deposition author(s): Merritt, E.A., Larson, E.T.

Revision History

  • 2014-03-26
    Type: Non-polymer description | Details: Correct V68 name