4JB9

Crystal structure of antibody VRC06 in complex with HIV-1 gp120 core


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 4JB9

Classification: viral protein / immune system

Total Structure Weight: 89800.66

Macromolecule Entities
Molecule Chains Length Organism Details
clade A/E 93TH057 HIV-1 gp120 core G 353 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
antibody VRC06 heavy chain H 232 Homo sapiens
antibody VRC06 light chain L 209 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.248
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.24 α = 90.00
b = 68.92 β = 90.00
c = 224.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-19
  • Released Date: 2013-05-08
  • Deposition author(s): Kwon, Y.D., Zhou, T., Srivatsan, S., Kwong, P.D.

Revision History

  • 2013-05-29
    Type: Database references
  • 2016-10-19
    Type: Other