4JAJ

Crystal Structure of Aurora Kinase A in complex with BENZO[C][1,8]NAPHTHYRIDIN-6(5H)-ONE

Structural Biology Knowledgebase: 4JAJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JAJ

Classification: transferase / transferase inhibitor

Total Structure Weight: 33241.41

Macromolecule Entities
Molecule Chains Length Organism Details
Aurora kinase A A 284 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Aurora2 Kinase (UNP RESIDUES 122-396)
Gene Name(s): AURKA Gene View AIK AIRK1 ARK1 AURA AYK1 BTAK IAK1 STK15 STK6

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XU1
Query on XU1

A benzo[c][1,8]naphthyridin-6(5H)-one
C12 H8 N2 O
YLSBDRGLLZDAKB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XU1 N/A in BindingDB
N/A in BindingMoad
IC50: 5540 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.232
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.84 α = 90.00
b = 81.84 β = 90.00
c = 169.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-18
  • Released Date: 2013-05-22
  • Deposition author(s): Jiang, X., Josephson, K., Huck, B., Goutopoulos, A., Karra, S.

Revision History

No revisions since initial release