4JAI

Crystal Structure of Aurora Kinase A in complex with N-{4-[(6-oxo-5,6-dihydrobenzo[c][1,8]naphthyridin-1-yl)amino]phenyl}benzamide

Structural Biology Knowledgebase: 4JAI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JAI

Classification: transferase / transferase inhibitor

Total Structure Weight: 33451.64

Macromolecule Entities
Molecule Chains Length Organism Details
Aurora kinase A A 284 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Aurora2 Kinase (UNP RESIDUES 122-396)
Gene Name(s): AURKA Gene View AIK AIRK1 ARK1 AURA AYK1 BTAK IAK1 STK15 STK6

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XU2
Query on XU2

A N-{4-[(6-oxo-5,6-dihydrobenzo[c][1,8]naphthyridin- 1-yl)amino]phenyl}benzamide
C25 H18 N4 O2
XLSPYLMTRXPYKY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XU2 N/A in BindingDB
N/A in BindingMoad
IC50: 4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.224
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.96 α = 90.00
b = 83.96 β = 90.00
c = 167.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-18
  • Released Date: 2013-05-22
  • Deposition author(s): Jiang, X., Josephson, K., Huck, B., Goutopoulos, A., Karra, S.

Revision History

No revisions since initial release