4J4V

Pentameric SFTSVN with Su

Structural Biology Knowledgebase: 4J4V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.223

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J4V

Classification: VIRAL PROTEIN

Total Structure Weight: 142934.67

Macromolecule Entities
Molecule Chains Length Organism Details
Nucleocapsid protein A, B, C, D, E 248 Severe fever with thrombocytopenia syndrome virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SVR
Query on SVR

A, B, C, D, E 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4- METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5- NAPHTHALENETRISULFONIC ACID
SURAMIN (Synonym)
C51 H40 N6 O23 S6
FIAFUQMPZJWCLV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SVR N/A in BindingDB
N/A in BindingMoad
Kd: 440 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.223
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 103.14 α = 90.00
b = 154.89 β = 102.12
c = 93.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-07
  • Released Date: 2013-05-22
  • Deposition author(s): Jiao, L., Ouyang, S., Liang, M., Niu, F., Shaw, N., Wu, W., Ding, W., Jin, C., Zhu, Y., Zhang, F., Wang, T., Li, C., Zuo, X., Luan, C.H., Li, D., Liu, Z.J.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update