4J4J

Crystal structure of the APOBEC3F Vif binding domain

Structural Biology Knowledgebase: 4J4J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J4J

Classification: HYDROLASE

Total Structure Weight: 49970.56

Macromolecule Entities
Molecule Chains Length Organism Details
DNA dC->dU-editing enzyme APOBEC-3F A, B 209 Homo sapiens Fragment: UNP residues 218-373
Gene Name(s): APOBEC3F Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.236
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 164.05 α = 90.00
b = 164.05 β = 90.00
c = 135.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-06
  • Released Date: 2013-11-06
  • Deposition author(s): Siu, K.K., Sultana, A., Lee, J.E.

Revision History

  • 2013-11-20
    Type: Citation | Details: Citation update