4J19

Structure of a novel telomere repeat binding protein bound to DNA

Structural Biology Knowledgebase: 4J19 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J19

Classification: Transcription / DNA

Total Structure Weight: 37866.19


Macromolecule Entities
Molecule Chains Length Organism Details
Homeobox-containing protein 1 A, B 113 Homo sapiens Fragment: DNA-BINDING DOMAIN, RESIDUES 233-345
Gene Name(s): HMBOX1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*TP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3') C 19 synthetic
DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*A)-3') D 19 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.172
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.43 α = 90.00
b = 116.49 β = 90.00
c = 75.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-01
  • Released Date: 2013-05-29
  • Deposition author(s): Kappei, D., Butter, F., Benda, C., Scheibe, M., Draskovic, I., Stevense, M., Lopes Novo, C., Basquin, C., Krastev, D.B., Kittler, R., Jessberger, R., Londono-Vallejo, A.J., Mann, M., Buchholz, F.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update