4J0D

tannin acyl hydrolase from Lactobacillus plantarum (Cadmium)

Structural Biology Knowledgebase: 4J0D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.144

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J0D

Classification: HYDROLASE

Total Structure Weight: 108746.00

Macromolecule Entities
Molecule Chains Length Organism Details
Tannase A, B 491 Lactobacillus plantarum Gene Name(s): tanLpl

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.144
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.94 α = 70.58
b = 62.92 β = 85.70
c = 84.07 γ = 78.96

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-30
  • Released Date: 2013-05-22
  • Deposition author(s): Ren, B., Wu, M., Wang, Q., Peng, X., Wen, H., Chen, Q., McKinstry, W.J.

Revision History

No revisions since initial release